Publications

Dadová, J.; Vrábel, M.; Adámik, M.; Brázdová, M.; Pohl, R.; Fojta, M.; Hocek, M. Azidopropylvinylsulfonamide as a New Bifunctional Click Reagent for Bioorthogonal Conjugations: Application for DNA-Protein Cross-Linking. Chemistry - A European Journal 2015, 21 (45), 16091-16102 DOI: 10.1002/chem.201502209.

Dadová, J.; Orság, P.; Pohl, R.; Brázdová, M.; Fojta, M.; Hocek, M. Vinylsulfonamide and Acrylamide Modification of DNA for Cross-linking with Proteins. Angewandte Chemie International Edition 2013, 52 (40), 10515-10518 DOI: 10.1002/anie.201303577.

Dadová, J.; Vidláková, P.; Pohl, R.; Havran, L.; Fojta, M.; Hocek, M. Aqueous Heck Cross-Coupling Preparation of Acrylate-Modified Nucleotides and Nucleoside Triphosphates for Polymerase Synthesis of Acrylate-Labeled DNA. The Journal of Organic Chemistry 2013, 78 (19), 9627-9637 DOI: 10.1021/jo4011574.

Danhel, A.; Trosanova, Z.; Balintová, J.; Havran, L.; Hocek, M.; Barek, J.; Fojta, M. Voltammetric analysis of 5-(4-Azidophenyl)-2′-deoxycytidine nucleoside and azidophenyl-labelled single- and double-stranded DNAs. Electrochimica Acta 2016, 215, 72-83 DOI: 10.1016/j.electacta.2016.08.096.

Danhel, A.; Raindlová, V.; Havran, L.; Barek, J.; Hocek, M.; Fojta, M. Voltammetric Study of dsDNA Modified by Multi-redox Label Based on N-methyl-4-hydrazino-7-nitrobenzofurazan. Electrochimica Acta 2014, 129, 348-357 DOI: 10.1016/j.electacta.2014.02.137.

Danhel, A.; Raindlová, V.; Havran, L.; Pivonkova, H.; Hocek, M.; Fojta, M. Electrochemical behaviour of 2,4-dinitrophenylhydrazi(o)ne as multi-redox centre DNA label at mercury meniscus modified silver solid amalgam electrode. Electrochimica Acta 2014, 126, 122-131 DOI: 10.1016/j.electacta.2013.09.147.

Dejmek, M.; Brázdová, A.; Otava, T.; Polidarová, M. Pimková; Klíma, M.; Smola, M.; Vavřina, Z.; Buděšínský, M.; Dračínský, M.; Liboska, R.; et al. Vinylphosphonate-based cyclic dinucleotides enhance STING-mediated cancer immunotherapy. European Journal of Medicinal Chemistry 2023, 259 (November).

Dhami, K.; Malyshev, D. A.; Ordoukhanian, P.; Kubelka, T.; Hocek, M.; Romesberg, F. E. Systematic exploration of a class of hydrophobic unnatural base pairs yields multiple new candidates for the expansion of the genetic alphabet. Nucleic Acids Research 2014, 42 (16), 10235-10244 DOI: 10.1093/nar/gku715.

Dian, J.; Fourmentin, S.; Jindřich, J.; Palágyi, A. Cyclodextrin-based Schiff base pro-fragrances: Synthesis and release studies. Beilstein Journal of Organic Chemistry 2022, 18 (September), 1346-1354.

Dian, J.; Jindřich, J.; Jelinek, I. Functionalized materials with fluorescent dyes for chemosensor applications. Monatshefte Fur Chemie 2017, 148 (11), 1929-1935 DOI: 10.1007/s00706-017-2041-6.

Dian, J.; Holec, T.; Jelinek, I.; Jindrich, J.; Valenta, J.; Pelant, I. Time evolution of photoluminescence response from porous silicon in hydrocarbon gas sensing. Physica Status Solidi A-Applied Research 2000, 182 (1), 485-488 DOI: 10.1002/1521-396X(200011)182:1<485::AID-PSSA485>3.0.CO;2-8.

Díaz-Holguín, A.; Rashidian, A.; Pijnenburg, D.; Ferreira, G. Monteiro; Štefela, A.; Kašpar, M.; Kudová, E.; Poso, A.; van Beuningen, R.; Pávek, P.; et al. When Two Become One: Conformational Changes in FXR/RXR Heterodimers Bound to Steroidal Antagonists. ChemMedChem 2023, 18 (4).

Dočekal, V.; Melaimi, M.; Petrželová, S.; Veselý, J.; Yan, X.; Bertrand, G. Synthesis of enantiopure 1,2,3-triazolylidene-type mesoionic carbene (MIC) conjugate acids featuring a rigid bicyclic scaffold. Organic Chemistry Frontiers 2024, 11 (8), 2178-2181.

Dočekal, V.; Koucký, F.; Císařová, I.; Veselý, J. Organocatalytic desymmetrization provides access to planar chiral [2.2]paracyclophanes. Nature Communications 2024, 15 (1).

Docekal, V.; Šimek, M.; Dračínský, M.; Vesely, J. Decarboxylative Organocatalytic Allylic Amination of Morita-Baylis-Hillman Carbamates. Chemistry-a European Journal 2018, 24 (51), 13441-13445 DOI: 10.1002/chem.201803677.

Doleželová, E.; Džubák, P.; Gurská, S.; Hajdúch, M.; Hocek, M.; Krajczyk, A.; Milisavljević, N.; Perlíková, P.; Slavětínská, L. Poštová; Slapničková, M.; et al. Synthesis and Antitrypanosomal Activity of 6-Substituted 7-Methyl-7-deazapurine Nucleosides. ACS Infectious Diseases 2021, 7 (4), 917-926.

Doleželová, E.; Downey, A. Michael; Hocek, M.; Nguyen, V. Hai; Pohl, R.; Rožánková, S.; Slapničková, M.; Tichý, M.; Tloušťová, E.; Zíková, A. Synthesis and anti-trypanosomal activity of 3'-fluororibonucleosides derived from 7-deazapurine nucleosides. Bioorganic and Medicinal Chemistry Letters 2021, 40 (May 15 2021), nestránkováno.

A. Downey, M.; Richter, C.; Pohl, R.; Mahrwald, R.; Hocek, M. Direct One-Pot Synthesis of Nucleosides from Unprotected or 5-O-Monoprotected D-Ribose. Organic Letters 2015, 17 (18), 4604-4607 DOI: 10.1021/acs.orglett.5b02332.

A. Downey, M.; Pohl, R.; Roithová, J.; Hocek, M. Synthesis of Nucleosides through Direct Glycosylation of Nucleobases with 5-O-Monoprotected or 5-Modified Ribose: Improved Protocol, Scope, and Mechanism. Chemistry-a European Journal 2017, 23 (16), 3910-3917 DOI: 10.1002/chem.201604955.

Dračínský, M.; Castaño, O.; Kotora, M.; Bouř, P. Rearrangement of Dewar Benzene Derivatives Studied by DFT. The Journal of Organic Chemistry 2010, 75 (3), 576-581 DOI: 10.1021/jo902065n.

Dračínský, M.; Drastík, M.; Kašpar, M.; Klepetářová, B.; Kronenberger, T.; Kudová, E.; Mičuda, S.; Pávek, P.; Štefela, A. (E)-7-Ethylidene-lithocholic Acid (7-ELCA) Is a Potent Dual Farnesoid X Receptor (FXR) Antagonist and GPBAR1 Agonist Inhibiting FXR-Induced Gene Expression in Hepatocytes and Stimulating Glucagon-like Peptide-1 Secretion From Enteroendocrine Cells. Frontiers in Pharmacology 2021, 12 (August), nestránkováno.

Drastík, M.; Holas, O.; Hroch, M.; Hutníková, M.; Kašpar, M.; Kudová, E.; Mičuda, S.; Pandey, A. V.; Pávek, P.; Smutný, T.; et al. 3 beta-Isoobeticholic acid efficiently activates the farnesoid X receptor (FXR) due to its epimerization to 3 alpha-epimer by hepatic metabolism. Journal of Steroid Biochemistry and Molecular Biology 2020, 202 (September), nestránkováno DOI: 10.1016/j.jsbmb.2020.105702.

Ducháčková, L.; Kadlcikova, A.; Kotora, M.; Roithová, J. Oxygen Superbases as Polar Binding Pockets in Nonpolar Solvents. Journal of the American Chemical Society 2010, 132 (36), 12660-12667 DOI: 10.1021/ja103744f.

Dunlop, D.; Horvath, P.; Klán, P.; Slanina, T.; Šebej, P. Central Ring Puckering Enhances the Stokes Shift of Xanthene Dyes. Chemistry - A European Journal 2024, 30 (19).

Dziuba, D.; Pospíšil, P.; Matyašovský, J.; Brynda, J.; Nachtigallová, D.; Rulíšek, L.; Pohl, R.; Hof, M.; Hocek, M. Solvatochromic fluorene-linked nucleoside and DNA as color-changing fluorescent probes for sensing interactions. Chem. Sci. 2016, 7 (9), 5775-5785 DOI: 10.1039/C6SC02548J.