Publications

Gerlich, D.; Jašík, J.; Andris, E.; Navrátil, R.; Roithová, J. Collisions of FeO ⁺ with H ₂ and He in a Cryogenic Ion Trap. ChemPhysChem 2016, 17 (22), 3723-3739 DOI: 10.1002/cphc.201600753.

Tsybizova, A.; Roithová, J. Copper-catalyzed reactions: Research in the gas phase: COPPER CATALYSIS. Mass Spectrometry Reviews 2016, 35 (1), 85-110 DOI: 10.1002/mas.21464.

Botha, F.; Slavíčková, M.; Pohl, R.; Hocek, M. Copper-mediated arylsulfanylations and arylselanylations of pyrimidine or 7-deazapurine nucleosides and nucleotides. Org. Biomol. Chem. 2016, 14 (42), 10018-10022 DOI: 10.1039/C6OB01917J.

Sabat, N.; Slavětínská, L. Poštová; Klepetářová, B.; Hocek, M. C–H Phosphonation of Pyrrolopyrimidines: Synthesis of Substituted 7- and 9-Deazapurine-8-phosphonate Derivatives. The Journal of Organic Chemistry 2016, 81 (19), 9507-9514 DOI: 10.1021/acs.joc.6b01970.

Baumgartner, B.; Bojdys, M. J.; Skrinjar, P.; Unterlass, M. M. Design Strategies in Hydrothermal Polymerization of Polyimides. Macromolecular Chemistry and Physics 2016, 217 (3), 485-500 DOI: 10.1002/macp.201500287.

Machara, A.; Endoma-Arias, M. Ann A.; Císařová, I.; D. Cox, P.; Hudlicky, T. Direct Synthesis of Noroxymorph­one from Thebaine: Unusual Ce ^IV Oxidation of a Methoxydiene-Iron Complex to an Enone-γ-Nitrate. European Journal of Organic Chemistry 2016, 2016 (8), 1500-1503 DOI: 10.1002/ejoc.201600153.

Koukal, P.; Ulč, J.; Nečas, D.; Kotora, M. Enantioselective Allylation of β-Haloacrylaldehydes: Formal Total Syntheses of Pteroenone and Antillatoxin. European Journal of Organic Chemistry 2016, 2016 (12), 2110-2114 DOI: 10.1002/ejoc.201600286.

Matoušová, E.; Koukal, P.; Formánek, B.; Kotora, M. Enantioselective Synthesis of the Unsaturated Fragment of Callyspongiolide. Organic Letters 2016, 18 (21), 5656-5659 DOI: 10.1021/acs.orglett.6b02897.

Kielkowski, P.; Cahová, H.; Pohl, R.; Hocek, M. Flexible double-headed cytosine-linked 2′-deoxycytidine nucleotides. Synthesis, polymerase incorporation to DNA and interaction with DNA methyltransferases. Bioorganic & Medicinal Chemistry 2016, 24 (6), 1268-1276 DOI: 10.1016/j.bmc.2016.01.057.

Roithová, J.; Gray, A.; Andris, E.; Jašík, J.; Gerlich, D. Helium Tagging Infrared Photodissociation Spectroscopy of Reactive Ions. Accounts of Chemical Research 2016, 49 (2), 223-230 DOI: 10.1021/acs.accounts.5b00489.

Raindlová, V.; Janoušková, M.; Slavíčková, M.; Perlíková, P.; Boháčová, S.; Milisavljevič, N.; Šanderová, H.; Benda, M.; Barvík, I.; Krásný, L.; et al. Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases. Nucleic Acids Research 2016, 44 (7), 3000-3012 DOI: 10.1093/nar/gkw171.

Řezanka, P.; Řezanková, K.; Sedláčková, H.; Mašek, J.; Rokosová, L.; Bláhová, M.; Řezanka, M.; Jindřich, J.; Sýkora, D.; Král, V. Influence of substituent position and cavity size of the regioisomers of monocarboxymethyl-α-, β-, and γ-cyclodextrins on the apparent stability constants of their complexes with both enantiomers of Tröger's base. Journal of Separation Science 2016, 39 (5), 980-985 DOI: 10.1002/jssc.201500845.

Güixens-Gallardo, P.; Hocek, M.; Perlíková, P. Inhibition of non-templated nucleotide addition by DNA polymerases in primer extension using twisted intercalating nucleic acid modified templates. Bioorganic & Medicinal Chemistry Letters 2016, 26 (2), 288-291 DOI: 10.1016/j.bmcl.2015.12.034.

Škríba, A.; Jašík, J.; Andris, E.; Roithová, J. Interaction of Ruthenium(II) with Terminal Alkynes: Benchmarking DFT Methods with Spectroscopic Data. Organometallics 2016, 35 (7), 990-994 DOI: 10.1021/acs.organomet.6b00021.

Albiñana, C. Berenguer; Machara, A.; Řezáčová, P.; Pachl, P.; Konvalinka, J.; Kožíšek, M. Kinetic, thermodynamic and structural analysis of tamiphosphor binding to neuraminidase of H1N1 (2009) pandemic influenza. European Journal of Medicinal Chemistry 2016, 121, 100-109 DOI: 10.1016/j.ejmech.2016.05.016.

Ye, S.; Kupper, C.; Meyer, S.; Andris, E.; Navrátil, R.; Krahe, O.; Mondal, B.; Atanasov, M.; Bill, E.; Roithová, J.; et al. Magnetic Circular Dichroism Evidence for an Unusual Electronic Structure of a Tetracarbene–Oxoiron(IV) Complex. Journal of the American Chemical Society 2016, 138 (43), 14312-14325 DOI: 10.1021/jacs.6b07708.

Machara, A.; Konvalinka, J.; Kotora, M. A MODULAR SYNTHESIS OF N -BENZOTRIAZOLE UREAS USING ALKYLATION OF 5-NITROBENZOTRIAZOLE. ChemistrySelect 2016, 1 (1), 101-107 DOI: 10.1002/slct.201600025.

Bednářová, E.; Hybelbauerová, S.; Jindřich, J. Optimized methods for preparation of 6 ^I -(ω-sulfanyl-alkylene-sulfanyl)-β-cyclodextrin derivatives. Beilstein Journal of Organic Chemistry 2016, 12, 349-352 DOI: 10.3762/bjoc.12.38.

Nakatani, K.; Tor, Y.; Dadová, J.; Cahová, H.; Hocek, M. Polymerase Synthesis of Base-Modified DNA; Springer International Publishing: Cham, 2016; Vol. 31, pp 123-144.

Makukhin, N.; Tretyachenko, V.; Moskovitz, J.; Míšek, J. A Ratiometric Fluorescent Probe for Imaging of the Activity of Methionine Sulfoxide Reductase A in Cells. Angewandte Chemie International Edition 2016, 55 (41), 12727-12730 DOI: 10.1002/anie.201605833.

Albiñana, C. Berenguer; Hayward, J. J.; Hudlicky, T.; Machara, A. Reinvestigation of acetylation of 3,4-dihydroxybenzaldehyde and reconciliation of previously reported analytical data. Tetrahedron Letters 2016, 57 (9), 1019-1021 DOI: 10.1016/j.tetlet.2016.01.075.

Dziuba, D.; Jurkiewicz, P.; Cebecauer, M.; Hof, M.; Hocek, M. A Rotational BODIPY Nucleotide: An Environment-Sensitive Fluorescence-Lifetime Probe for DNA Interactions and Applications in Live-Cell Microscopy. Angewandte Chemie International Edition 2016, 55 (1), 174-178 DOI: 10.1002/anie.201507922.

Bednářová, E.; Colacino, E.; Lamaty, F.; Kotora, M. A Ruthenium Complex-Catalyzed Cyclotrimerization of Halodiynes with Nitriles. Synthesis of 2- and 3-Halopyridines. Advanced Synthesis & Catalysis 2016, 358 (12), 1916-1923 DOI: 10.1002/adsc.201600127.

Dziuba, D.; Pospíšil, P.; Matyašovský, J.; Brynda, J.; Nachtigallová, D.; Rulíšek, L.; Pohl, R.; Hof, M.; Hocek, M. Solvatochromic fluorene-linked nucleoside and DNA as color-changing fluorescent probes for sensing interactions. Chem. Sci. 2016, 7 (9), 5775-5785 DOI: 10.1039/C6SC02548J.

Machara, A.; Lux, V.; Kožíšek, M.; Šašková, K. Grantz; Štěpánek, O.; Kotora, M.; Parkan, K.; Pávová, M.; Glass, B.; Sehr, P.; et al. Specific Inhibitors of HIV Capsid Assembly Binding to the C-Terminal Domain of the Capsid Protein: Evaluation of 2-Arylquinazolines as Potential Antiviral Compounds. Journal of Medicinal Chemistry 2016, 59 (2), 545-558 DOI: 10.1021/acs.jmedchem.5b01089.