Publications

Roithová, J.; Gray, A.; Andris, E.; Jašík, J.; Gerlich, D. Helium Tagging Infrared Photodissociation Spectroscopy of Reactive Ions. Accounts of Chemical Research 2016, 49 (2), 223-230 DOI: 10.1021/acs.accounts.5b00489.

Raindlová, V.; Janoušková, M.; Slavíčková, M.; Perlíková, P.; Boháčová, S.; Milisavljevič, N.; Šanderová, H.; Benda, M.; Barvík, I.; Krásný, L.; et al. Influence of major-groove chemical modifications of DNA on transcription by bacterial RNA polymerases. Nucleic Acids Research 2016, 44 (7), 3000-3012 DOI: 10.1093/nar/gkw171.

Řezanka, P.; Řezanková, K.; Sedláčková, H.; Mašek, J.; Rokosová, L.; Bláhová, M.; Řezanka, M.; Jindřich, J.; Sýkora, D.; Král, V. Influence of substituent position and cavity size of the regioisomers of monocarboxymethyl-α-, β-, and γ-cyclodextrins on the apparent stability constants of their complexes with both enantiomers of Tröger's base. Journal of Separation Science 2016, 39 (5), 980-985 DOI: 10.1002/jssc.201500845.

Güixens-Gallardo, P.; Hocek, M.; Perlíková, P. Inhibition of non-templated nucleotide addition by DNA polymerases in primer extension using twisted intercalating nucleic acid modified templates. Bioorganic & Medicinal Chemistry Letters 2016, 26 (2), 288-291 DOI: 10.1016/j.bmcl.2015.12.034.

Škríba, A.; Jašík, J.; Andris, E.; Roithová, J. Interaction of Ruthenium(II) with Terminal Alkynes: Benchmarking DFT Methods with Spectroscopic Data. Organometallics 2016, 35 (7), 990-994 DOI: 10.1021/acs.organomet.6b00021.

Albiñana, C. Berenguer; Machara, A.; Řezáčová, P.; Pachl, P.; Konvalinka, J.; Kožíšek, M. Kinetic, thermodynamic and structural analysis of tamiphosphor binding to neuraminidase of H1N1 (2009) pandemic influenza. European Journal of Medicinal Chemistry 2016, 121, 100-109 DOI: 10.1016/j.ejmech.2016.05.016.

Ye, S.; Kupper, C.; Meyer, S.; Andris, E.; Navrátil, R.; Krahe, O.; Mondal, B.; Atanasov, M.; Bill, E.; Roithová, J.; et al. Magnetic Circular Dichroism Evidence for an Unusual Electronic Structure of a Tetracarbene–Oxoiron(IV) Complex. Journal of the American Chemical Society 2016, 138 (43), 14312-14325 DOI: 10.1021/jacs.6b07708.

Machara, A.; Konvalinka, J.; Kotora, M. A MODULAR SYNTHESIS OF N -BENZOTRIAZOLE UREAS USING ALKYLATION OF 5-NITROBENZOTRIAZOLE. ChemistrySelect 2016, 1 (1), 101-107 DOI: 10.1002/slct.201600025.

Bednářová, E.; Hybelbauerová, S.; Jindřich, J. Optimized methods for preparation of 6 ^I -(ω-sulfanyl-alkylene-sulfanyl)-β-cyclodextrin derivatives. Beilstein Journal of Organic Chemistry 2016, 12, 349-352 DOI: 10.3762/bjoc.12.38.

Nakatani, K.; Tor, Y.; Dadová, J.; Cahová, H.; Hocek, M. Polymerase Synthesis of Base-Modified DNA; Springer International Publishing: Cham, 2016; Vol. 31, pp 123-144.

Makukhin, N.; Tretyachenko, V.; Moskovitz, J.; Míšek, J. A Ratiometric Fluorescent Probe for Imaging of the Activity of Methionine Sulfoxide Reductase A in Cells. Angewandte Chemie International Edition 2016, 55 (41), 12727-12730 DOI: 10.1002/anie.201605833.

Albiñana, C. Berenguer; Hayward, J. J.; Hudlicky, T.; Machara, A. Reinvestigation of acetylation of 3,4-dihydroxybenzaldehyde and reconciliation of previously reported analytical data. Tetrahedron Letters 2016, 57 (9), 1019-1021 DOI: 10.1016/j.tetlet.2016.01.075.

Dziuba, D.; Jurkiewicz, P.; Cebecauer, M.; Hof, M.; Hocek, M. A Rotational BODIPY Nucleotide: An Environment-Sensitive Fluorescence-Lifetime Probe for DNA Interactions and Applications in Live-Cell Microscopy. Angewandte Chemie International Edition 2016, 55 (1), 174-178 DOI: 10.1002/anie.201507922.

Bednářová, E.; Colacino, E.; Lamaty, F.; Kotora, M. A Ruthenium Complex-Catalyzed Cyclotrimerization of Halodiynes with Nitriles. Synthesis of 2- and 3-Halopyridines. Advanced Synthesis & Catalysis 2016, 358 (12), 1916-1923 DOI: 10.1002/adsc.201600127.

Dziuba, D.; Pospíšil, P.; Matyašovský, J.; Brynda, J.; Nachtigallová, D.; Rulíšek, L.; Pohl, R.; Hof, M.; Hocek, M. Solvatochromic fluorene-linked nucleoside and DNA as color-changing fluorescent probes for sensing interactions. Chem. Sci. 2016, 7 (9), 5775-5785 DOI: 10.1039/C6SC02548J.

Machara, A.; Lux, V.; Kožíšek, M.; Šašková, K. Grantz; Štěpánek, O.; Kotora, M.; Parkan, K.; Pávová, M.; Glass, B.; Sehr, P.; et al. Specific Inhibitors of HIV Capsid Assembly Binding to the C-Terminal Domain of the Capsid Protein: Evaluation of 2-Arylquinazolines as Potential Antiviral Compounds. Journal of Medicinal Chemistry 2016, 59 (2), 545-558 DOI: 10.1021/acs.jmedchem.5b01089.

Andris, E.; Jašík, J.; Gómez, L.; Costas, M.; Roithová, J. Spectroscopic Characterization and Reactivity of Triplet and Quintet Iron(IV) Oxo Complexes in the Gas Phase. Angewandte Chemie International Edition 2016, 55 (11), 3637-3641 DOI: 10.1002/anie.201511374.

Humpl, M.; Tauchman, J.; Topolovčan, N.; Kretschmer, J.; Hessler, F.; Císařová, I.; Kotora, M.; Vesely, J. Stereoselective Synthesis of Ezetimibe via Cross-Metathesis of Homoallylalcohols and α-Methylidene-β-Lactams. The Journal of Organic Chemistry 2016, 81 (17), 7692-7699 DOI: 10.1021/acs.joc.6b01406.

Mikušek, J.; Matouš, P.; Matoušová, E.; Janoušek, M.; Kuneš, J.; Pour, M. Substrate Control in the Gold(I)-Catalyzed Cyclization of β - Propargylamino Acrylic Esters and Further Transformations of the Resultant Dihydropyridines. Advanced Synthesis & Catalysis 2016, 358 (18), 2912-2922 DOI: 10.1002/adsc.201600412.

Benkovics, G.; Hodek, O.; Havlikova, M.; Bosakova, Z.; Coufal, P.; Malanga, M.; Fenyvesi, E.; Darcsi, A.; Beni, S.; Jindřich, J. Supramolecular structures based on regioisomers of cinnamyl-α-cyclodextrins – new media for capillary separation techniques. Beilstein Journal of Organic Chemistry 2016, 12, 97-109 DOI: 10.3762/bjoc.12.11.

Sabat, N.; Nauš, P.; Matyašovský, J.; Dziuba, D.; Slavětínská, L.; Hocek, M. Synthesis of Fluorescent 2-Substituted 6-(Het)aryl-7-deazapurine Bases {4-(Het)aryl-pyrrolo[2,3-d]pyrimidines} by Aqueous Suzuki–Miyaura Cross-Coupling Reactions. Synthesis 2016, 48 (07), 1029-1045 DOI: 10.1055/s-0035-1561287.

Machara, A.; Endoma-Arias, M.; Císařová, I.; Cox, D.; Hudlicky, T. Synthesis of Nororipavine and Noroxymorphone via N- and O-Demethylation of Iron Tricarbonyl Complex of Thebaine. Synthesis 2016, 48 (12), e1-e1 DOI: 10.1055/s-0035-1562345.

Korotvička, A.; Frejka, D.; Hampejsová, Z.; Císařová, I.; Kotora, M. Synthesis of Phenanthridines via a Rhodium-Catalyzed C–C Bond Cleavage Reaction of Biphenylene with Nitriles. Synthesis 2016, 48 (07), 987-996 DOI: 10.1055/s-0035-1561343.

Kolská, K.; Ghavre, M.; Pour, M.; Hybelbauerová, S.; Kotora, M. Total Synthesis of Coibacin D by Using Enantioselective Allylation and Metathesis Reactions. Asian Journal of Organic Chemistry 2016, 5 (5), 646-651 DOI: 10.1002/ajoc.201600022.

Havlikova, M.; Bosakova, Z.; Benkovics, G.; Jindřich, J.; Popr, M.; Coufal, P. Use of 6-O-mono-substituted derivatives of β-cyclodextrin-bearing substituent with two permanent positive charges in capillary electrophoresis. Chemical Papers 2016, 70 (9), 1144–1154 DOI: 10.1515/chempap-2016-0053.