Kočková O, Kasal P, Zelený J, Walterová Z, Vlčková V, Jindřich J.  2024.  Effect of Counterions on the Soft Ionization Mass Spectra of Analytes with Multiple Permanent Charges. Analytical Chemistry. 96(18):6940-6946.

Lebedinskiy K, Barvík I, Tošner Z, Císařová I, Jindřich J, Hrdina R.  2024.  Spatial arrangements of cyclodextrin host–guest complexes in solution studied by ¹³ C NMR and molecular modelling. Beilstein Journal of Organic Chemistry. 20:331-335.

Lebedinskiy K, Jindřich J.  2023.  Preparation of 6-Monohalo-β-cyclodextrin Derivatives with Selectively Methylated Rims via Diazonium Salts. ACS Omega. 8(31):28268-28276.

Vrkoslav V, Horká P, Jindřich J, Buděšínský M, Cvačka J.  2023.  Silver Ion High-Performance Liquid Chromatography—Atmospheric Pressure Chemical Ionization Mass Spectrometry: A Tool for Analyzing Cuticular Hydrocarbons. Molecules. 28(9):3794.

Palágyi A, Jindřich J, Dian J, Fourmentin S.  2022.  Cyclodextrin-based Schiff base pro-fragrances: Synthesis and release studies. Beilstein Journal of Organic Chemistry. 18(1):1346-1354.

Kasal P, Jindřich J.  2022.  Kinetics of Nucleophilic Substitution of Compounds Containing Multiple Leaving Groups Bound to a Neopentyl Skeleton. ACS Omega. 7(23):20137-20144.

Lebedinskiy K, Lobaz V, Jindřich J.  2022.  Preparation of β-cyclodextrin-based dimers with selectively methylated rims and their use for solubilization of tetracene. Beilstein Journal of Organic Chemistry. 18(1):1596-1606.

Kasal P, Michel M, Gaálová J, Cuřínová P, Izák P, Jindřich J.  2021.  Chiral Nafion membranes prepared by strong electrostatic binding of multiply positively charged β-cyclodextrin derivatives for tryptophan racemic mixtures’ separation. Materials Today Communications. :102234.

Kasal P, Jindřich J.  2021.  Mono-6-Substituted Cyclodextrins—Synthesis and Applications. Molecules. 26(16):5065.

Gaálová J, Michel M, Bourassi M, Ladewig BP, Kasal P, Jindřich J, Izák P.  2021.  Nafion membranes modified by cationic cyclodextrin derivatives for enantioselective separation. Separation and Purification Technology. 266:118538.

Noël S, Caronia E, Bricout H, Tichá IChena, Menuel S, Ponchel A, Tilloy S, Galia A, Monflier É, Jindřich J et al..  2020.  Asymmetric hydrogenation of ethyl pyruvate over aqueous dispersed Pt nanoparticles stabilized by a cinchonidine-functionalized β-cyclodextrin. Catalysis Communications. :106272.

Sýkora D, Jindřich J, Král V, Jakubek M, Tatar A, Kejík Z, Martásek P, Zakharov S.  2020.  Formaldehyde Reacts with Amino Acids and Peptides with a Potential Role in Acute Methanol Intoxication. Journal of Analytical Toxicology. 44(8):880-885.

Tichá IChena, Hybelbauerová S, Jindřich J.  2019.  New α- and β-cyclodextrin derivatives with cinchona alkaloids used in asymmetric organocatalytic reactions. Beilstein Journal of Organic Chemistry. 15(1):830-839.

Tichá I, Benkovics G, Malanga M, Jindřich J.  2018.  Enhanced single-isomer separation and pseudoenantiomer resolution of new primary rim heterobifunctionalized α-cyclodextrin derivatives. Beilstein Journal of Organic Chemistry. 14(1):2829-2837.

Oltova J, Jindřich J, Skuta C, Svoboda O, Machonova O, Bartunek P.  2018.  Zebrabase: An Intuitive Tracking Solution for Aquatic Model Organisms. Zebrafish. 15(6):642-647.

Jindřich J.  2017.  Database Resources in Chemistry. Chemické listy. 111:731-737.

Dian J, Jindřich J, Jelinek I.  2017.  Functionalized materials with fluorescent dyes for chemosensor applications. Monatshefte für Chemie - Chemical Monthly. 148(11):1929-1935.

Skuta C, Popr M, Muller T, Jindřich J, Kahle M, Sedlak D, Svozil D, Bartunek P.  2017.  Probes & Drugs portal: an interactive, open data resource for chemical biology. Nature Methods. 14(8):759-760.

Bláhová M, Filippov SK, Kováčik L, Horský J, Hybelbauerová S, Syrová Z, Křížek T, Jindřich J.  2017.  Synthesis and supramolecular properties of regioisomers of mononaphthylallyl derivatives of γ-cyclodextrin. Beilstein Journal of Organic Chemistry. 13(1):2509-2520.

Kučerová G, Kalíková K, Procházková H, Popr M, Jindřich J, Coufal P, Tesařová E.  2016.  Chromatographic Characterization of a New Cationic β-CD Based Stationary Phase Prepared by Dynamic Coating. Chromatographia. 79(9-10):529-536.

Řezanka P, Řezanková K, Sedláčková H, Mašek J, Rokosová L, Bláhová M, Řezanka M, Jindřich J, Sýkora D, Král V.  2016.  Influence of substituent position and cavity size of the regioisomers of monocarboxymethyl-α-, β-, and γ-cyclodextrins on the apparent stability constants of their complexes with both enantiomers of Tröger's base. Journal of Separation Science. 39(5):980-985.

Bednářová E, Hybelbauerová S, Jindřich J.  2016.  Optimized methods for preparation of 6(I)-(ω-sulfanyl-alkylene-sulfanyl)-β-cyclodextrin derivatives. Beilstein Journal of Organic Chemistry. 12:349-352.

Benkovics G, Hodek O, Havlikova M, Bosakova Z, Coufal P, Malanga M, Fenyvesi E, Darcsi A, Beni S, Jindřich J.  2016.  Supramolecular structures based on regioisomers of cinnamyl-α-cyclodextrins – new media for capillary separation techniques. Beilstein Journal of Organic Chemistry. 12:97-109.

Havlikova M, Bosakova Z, Benkovics G, Jindřich J, Popr M, Coufal P.  2016.  Use of 6-O-mono-substituted derivatives of β-cyclodextrin-bearing substituent with two permanent positive charges in capillary electrophoresis. Chemical Papers. 70(9):1144-1154.

Jelinek I, Jindřich J, Dian J.  2015.  The Development of Optical Sensor with Chemically Modified Electroluminescence Diodes. Chemicke Listy. 109(5):377-384.